Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004978232 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11108558 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA | 19243 | 0.17322680405503577 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG | 17671 | 0.15907555238042598 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 11805 | 0.0 | 43.54634 | 1 |
GGTATCA | 4925 | 0.0 | 39.283794 | 1 |
CGCAATA | 1730 | 0.0 | 28.910784 | 36 |
ATCAACG | 18330 | 0.0 | 28.377295 | 3 |
TCTAGCG | 1800 | 0.0 | 28.361876 | 28 |
TCAACGC | 18820 | 0.0 | 27.638706 | 4 |
CAACGCA | 19040 | 0.0 | 27.482769 | 5 |
TATCAAC | 19180 | 0.0 | 27.014227 | 2 |
AATACGA | 1870 | 0.0 | 26.930555 | 39 |
CTAGCGG | 1905 | 0.0 | 26.617432 | 29 |
AACGCAG | 20740 | 0.0 | 25.313583 | 6 |
ATTAATC | 3690 | 0.0 | 25.240435 | 45 |
AAAGTCG | 3770 | 0.0 | 24.154745 | 59 |
ACGAAAG | 3705 | 0.0 | 24.113121 | 56 |
AGGTTCG | 3810 | 0.0 | 24.08179 | 67 |
ATACGAA | 2075 | 0.0 | 23.771355 | 40 |
AGAACGA | 3875 | 0.0 | 23.322409 | 53 |
GAACGAA | 3840 | 0.0 | 23.17567 | 54 |
AGTCGGA | 4020 | 0.0 | 22.909693 | 61 |
CAATACG | 2220 | 0.0 | 22.529573 | 38 |