EGAF00004978246 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004978246
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26568164
Sequences flagged as poor quality	0
Sequence length	75
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	37141	0.1397951322492589	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	36551	0.13757442930569083	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	33892	0.12756621044645763	No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGC	31205	0.11745260229498733	No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATG	26916	0.10130922106623551	No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCT	26661	0.10034942572621879	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	11715	38.98782	1
GTATCAA	25130	37.943462	1
TCAACGC	33765	28.453321	4
CAACGCA	34030	28.415712	5
ATCAACG	33895	28.283129	3
AACGCAG	36030	26.885897	6
TCTAGCG	11825	23.160162	28
CTAGCGG	12080	22.757141	29
ACGCAGA	43860	22.03851	7
AAAGTCG	13495	21.981512	59
AGAACGA	14185	20.988022	53
AGTCGGA	14160	20.802876	61
ACGAAAG	14210	20.779398	56
AATACGA	13195	20.62624	39
CGCAGAG	46580	20.573923	8
CGCAATA	13585	20.491459	36
AAGTCGG	14585	20.19669	60
AGGTTCG	14480	20.1525	67
GCAATAC	13790	20.011734	37
GAACGAA	14890	19.924791	54