EGAF00004978313 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004978313
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10408823
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA	23420	0.22500142427246578	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACG	21876	0.21016785471325625	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAA	15634	0.15019949902116694	No Hit
GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAA	11354	0.1090805367715447	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	14235	43.786716	1
GGTATCA	5740	42.66671	1
TCTAGCG	1775	30.116163	28
ATCAACG	20855	29.935234	3
ATTAATC	4160	29.852009	45
TCAACGC	21255	29.370611	4
CAACGCA	21645	28.885881	5
CTAGCGG	1875	28.87881	29
TATCAAC	22125	28.420403	2
AAAGTCG	4365	28.048147	59
AGGTTCG	4425	27.901245	67
ACGAAAG	4390	27.731434	56
GAACGAA	4450	27.512262	54
CGCAATA	1965	27.217897	36
AACGCAG	23165	26.975227	6
AGAACGA	4635	26.562447	53
AGTCGGA	4640	26.311483	61
AATACGA	2045	25.479565	39
CATTAAT	5210	24.16682	44
CAATACG	2195	24.052666	38