FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004978622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004978622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10891336
Sequences flagged as poor quality0
Sequence length35-151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG157920.14499598580008918No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCG8300.006527457.81576873
TTAGCCG15852.1717246E-46.36982637
CGCGACC27600.0081665345.124032145