FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004978636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004978636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8893445
Sequences flagged as poor quality0
Sequence length35-151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG224610.25255679885578647No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC11650.00243997466.81155063
TGTACGT19450.0079410956.0833507145
GTTTACT52701.6370905E-115.06617641
GTTTAAT67350.05.03557971
Produced by FastQC (version 0.11.5)