FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004978906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004978906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30414119
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG31400.026.9734843
GTATCGA34050.024.5656644
CCCGTAT42100.024.1989061
TATCGAA38350.021.8112355
CCGTATC41650.021.7642232
ATCGCGC48300.016.52398167
CGTGTTA52650.015.09102559
TACATCG54600.014.68135864
ACATCGC57900.014.14699865
CGATAAC36700.013.82891858
GACGATA37850.013.77796956
ATCGAAG70200.013.3611766
TCCGATT59250.013.34991552
TCGCGCC61000.013.31341368
ATAACGT38250.013.26879260
CTCCGAT64250.013.1864251
GATAACG39300.013.18136659
CATCGCG65550.012.86976566
TATACGG26550.012.39141913
GTCCGAT21250.012.3562631
Produced by FastQC (version 0.11.5)