FastQCFastQC Report
Thu 9 Feb 2023
EGAF00004980225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112674345
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTG4072140.3614079141085755No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTTTTT3023120.2683059750646875No Hit
GGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGT1966660.17454372599192833No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTT1935180.1717498335579408No Hit
GGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAG1449260.12862377855402665No Hit
GTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTT1357450.12047551729721614No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTTGTTTTTT1353130.12009211147400059No Hit
GTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGG1195960.10614306211409526No Hit
CACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAGCT1187870.10542506370904575No Hit
GGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGAT1144470.10157325520729675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)