FastQCFastQC Report
Thu 9 Feb 2023
EGAF00004980226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112674345
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGA7068570.6273451156960352No Hit
GCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGG6790450.6026615907995737No Hit
GGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAG4433060.39344005061666876No Hit
CGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGG4014810.3563197993296522No Hit
CACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAGCT3619260.3212142036414767No Hit
GTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGG3574950.3172816314130781No Hit
GGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGAT3477920.3086700881198821No Hit
CTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAG3188670.2829987607205527No Hit
CAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAGCTTGAGCCCAGGAGTT2135650.18954181628479844No Hit
GCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATA1795090.15931665722130445No Hit
CTCTCAGGGAGGCTAAGAGGCGGGAGGATAGCTTGAGCCCAGGAGTTCGA1323860.11749435951901918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)