FastQCFastQC Report
Tue 28 Jun 2022
EGAF00004980243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142179608
Sequences flagged as poor quality0
Sequence length100
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTG9066310.637665986531627No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTTTTT4561440.32082237841027106No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTT4310310.3031595079373126No Hit
GGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGT4074810.28659595122811143No Hit
GGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAG3633440.25555282161138043No Hit
GTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGG2905670.20436615636188843No Hit
GGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGAT2643540.1859296165734259No Hit
CTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAG2540900.17871057852403138No Hit
GTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTT2487630.1749639090297675No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTTTTTTTT2422900.17041121677589657No Hit
CACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAGCT2335570.16426898574653548No Hit
GGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTT2100760.14775395920348858No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTTGTCTTT1956560.13761185781297133No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTTGTTTTTT1955280.13752183083807631No Hit
GGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTTG1743690.12263994988648441No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)