FastQCFastQC Report
Thu 12 May 2022
EGAF00004980253

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980253
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244588229
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT4644120.18987504096119032No Hit
GGGGGTTCGATTCCTTCCTTTTTTGTCTAGATTTTATGTATACGGGTTCT3791170.15500214444089214No Hit
GTGGGGGGCATCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACT3439070.1406065211748191No Hit
GGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTG3373170.1379121969111604No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA3322700.1358487288445921No Hit
GTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTG3222220.13174059983074657No Hit
GTCGGCAGAAAGGATTATGGGTGGAAAACATTGGCTCTTCCTTGGGGAGT2690930.11001878589995433No Hit
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG2608320.10664127258552578No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC2520320.10304338889505595No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT2510970.10266111375294353No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)