FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004980305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2353
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTTAAGGTACTGAATCTCTTTAGT40.16999575010624735No Hit
AAGATAATCACGAGTATCCTTTCCTTT40.16999575010624735No Hit
CCCTCATCGTCACGTTTATGGTGAACA40.16999575010624735No Hit
AACGCCCTGCATACGAAAAGACAGAAT30.1274968125796855No Hit
GCTTTAAAATAGTTGTTATAGATATTC30.1274968125796855No Hit
GCTAAAGGTGCTTTGACTTATACCGAT30.1274968125796855No Hit
AGCAATCCAAACTTTGTTACTCGTCAG30.1274968125796855No Hit
GCATTTAGTAGCGGTAAAGTTAGACCA30.1274968125796855No Hit
AATAATGTTTTCCGTAAATTCAGCGCC30.1274968125796855No Hit
CGTCAACCATACCAGCAGAGGAAGCAT30.1274968125796855No Hit
TTACAGTATGCCCATCGCAGTTCGCTA30.1274968125796855No Hit
GTTCCTGAATGAATGGGAAGCCTTCAA30.1274968125796855No Hit
AAAAAGCCGCCTCCGGTGGCATTCAAG30.1274968125796855No Hit
CACCAACAGAAACAACCTGATTAGCGG30.1274968125796855No Hit
GACGAATCACCAGAACGGAAAACATCC30.1274968125796855No Hit
AGCTTACTAAAATGCAACTGGACAATC30.1274968125796855No Hit
GGGATGAACATAATAAGCAATGACGGC30.1274968125796855No Hit
CAGGCCGTTTGAATGTTGACGGGATGA30.1274968125796855No Hit
TGAACAGTGGATTAAGTTCATGAAGGA30.1274968125796855No Hit
GTTTACCTTGCGTGTACGCGCAGGAAA30.1274968125796855No Hit
TACCGCTTCGGCGTTATAACCTCACAC30.1274968125796855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)