FastQCFastQC Report
Tue 7 May 2024
EGAF00004980306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2353
Total Bases230.5 kbp
Sequences flagged as poor quality0
Sequence length98
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGA40.16999575010624735No Hit
TGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTG30.1274968125796855No Hit
TGACGCACGTTTTCTTCTGCGTCAGTAAGAACGTCAGTGTTTCCTGCGCG30.1274968125796855No Hit
GCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTA30.1274968125796855No Hit
TGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCT30.1274968125796855No Hit
AATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGCATCAAGCTC30.1274968125796855No Hit
TCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC30.1274968125796855No Hit
ATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAAC30.1274968125796855No Hit
CGCTCGGCGCCAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGG30.1274968125796855No Hit
CCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTAC30.1274968125796855No Hit
AAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTT30.1274968125796855No Hit
CAGACACCTAAAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGT30.1274968125796855No Hit
TTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCAT30.1274968125796855No Hit
TTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGG30.1274968125796855No Hit
TTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTA30.1274968125796855No Hit
CCAGAACGTTTTTTACCTTTAGACATTACATCACTCCTTCTGCACGTAAT30.1274968125796855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)