FastQCFastQC Report
Tue 7 May 2024
EGAF00004980313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2639
Total Bases71.2 kbp
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACCGCTTTGGCCTCTATTAAGCTC30.11367942402425162No Hit
TCAATAGCAAGGCCACGACGCAATGGA30.11367942402425162No Hit
TGGCAGCAACGGAAACCATAACGAGCA30.11367942402425162No Hit
GGATATTTCTGATGAGTCGAAAAATTA30.11367942402425162No Hit
ATTAACCCTGATACCAATAAAATCCCT30.11367942402425162No Hit
AACATACGAAGGCGCATAACGATACCA30.11367942402425162No Hit
TTAGCAGCAAGGTCCATATCTGACTTT30.11367942402425162No Hit
ATAGATATTCAAATAACCCTGAAACAA30.11367942402425162No Hit
AGCGAAACCAATCCGCGGCATTTAGTA30.11367942402425162No Hit
AAGGACGTCAATAGTCACACAGTCCTT30.11367942402425162No Hit
AAAGTAAAAATGTCTACAGTAGAGTCA30.11367942402425162No Hit
TTTCTGACGAGTAACAAAGTTTGGATT30.11367942402425162No Hit
GTCGCCAGCAATATCGGTATAAGTCAA30.11367942402425162No Hit
TTTAGCCACATAGAAACCAACAGCCAT30.11367942402425162No Hit
AGTATCGGCAACAGCTTTATCAATACC30.11367942402425162No Hit
AATGGCGTCGAGCGTCCGGTTAAAGCC30.11367942402425162No Hit
TCAGCGCCTTCCATGATGAGACAGGCC30.11367942402425162No Hit
TAAATTATGTCTAATATTCAAACTGGC30.11367942402425162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)