FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004980314

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980314
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2639
Sequences flagged as poor quality0
Sequence length98
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN60.22735884804850323No Hit
TCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTT30.11367942402425162No Hit
TTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGAC30.11367942402425162No Hit
GCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATA30.11367942402425162No Hit
TTTATCCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCA30.11367942402425162No Hit
AAGGCTCTAATGTTCCTAACCCTGATGAGGCCGTCCCTAGTTTTGTTTCT30.11367942402425162No Hit
AAAATACTGATAGCAGTCGGCGTGTGAATCATTAGCCTTGCGACCCTCGG30.11367942402425162No Hit
GGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAG30.11367942402425162No Hit
CGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACAC30.11367942402425162No Hit
TAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG30.11367942402425162No Hit
GTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAG30.11367942402425162No Hit
AAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGTTGACCACCTACATAC30.11367942402425162No Hit
CACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCT30.11367942402425162No Hit
ATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTC30.11367942402425162No Hit
TGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGT30.11367942402425162No Hit
TGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTT30.11367942402425162No Hit
TTCCGCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCAGTAGTAATT30.11367942402425162No Hit
AAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGAC30.11367942402425162No Hit
GCCAGCGATAACCGGAGTAGTTGAAATGGTAATAAGACGACCAATCTGAC30.11367942402425162No Hit
CGTATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCTCTTTTTGAG30.11367942402425162No Hit
TAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTT30.11367942402425162No Hit
GAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCG30.11367942402425162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)