FastQCFastQC Report
Tue 7 May 2024
EGAF00004980315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2524
Total Bases68.1 kbp
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAGCAATATCAGCACCAACAGAAAC30.11885895404120445No Hit
ACCTGTAGGAAGTGTCCGCATAAAGTG30.11885895404120445No Hit
CATGAAACCAACATAAACATTATTGCC30.11885895404120445No Hit
CCATAAGGCCACGTATTTTGCAAGCTA30.11885895404120445No Hit
ACTTTGAGCGTATCGAGGCTCTTAAAC30.11885895404120445No Hit
AATCCTGACGGTTATTTCCTAGACAAA30.11885895404120445No Hit
ATGTTTTCATGCCTCCAAATCTTGGAG30.11885895404120445No Hit
TGTCTACAGTAGAGTCAATAGCAAGGC30.11885895404120445No Hit
TGCATACGAAAAGACAGAATCTCTTCC30.11885895404120445No Hit
AAAGCCGCCTCCGGTGGCATTCAAGGT30.11885895404120445No Hit
GTGAAATTTCTATGAAGGATGTTTTCC30.11885895404120445No Hit
AAAACTGGCCTAACGACGTTTGGTCAG30.11885895404120445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)