FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004980316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2524
Sequences flagged as poor quality0
Sequence length98
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN60.2377179080824089No Hit
CTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCT40.15847860538827258No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.15847860538827258No Hit
CGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATTAAAGAGA40.15847860538827258No Hit
TTTGATGCCGACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTC30.11885895404120445No Hit
GGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGA30.11885895404120445No Hit
GCCAGCAGTCCACTTCGATTTAATTCGTAAACAAGCAGTAGTAATTCCTG30.11885895404120445No Hit
CTTTCGTATTCTGGCGTGAAGTCGCCGACTGAATGCCAGCAATCTCTTTT30.11885895404120445No Hit
AAGAGAATCTCTACCATGAACAAAATGTGACTCATATCTAAACCAGTCCT30.11885895404120445No Hit
TCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCTAT30.11885895404120445No Hit
TGCGTCATGGAAGCGATAAAACTCTGCAGGTTGGATACGCCAATCATTTT30.11885895404120445No Hit
CTACAGTAGAGTCAATAGCAAGGCCACGACGCAATGGAGAAAGACGGAGA30.11885895404120445No Hit
GACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCG30.11885895404120445No Hit
TATACTCATCGCGAATATCCTTAAGAGGGCGTTCAGCAGCCAGCTTGCGG30.11885895404120445No Hit
AAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATA30.11885895404120445No Hit
CGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTT30.11885895404120445No Hit
TTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTG30.11885895404120445No Hit
TGGTTTTCTTCATTGCATTCAGATGGATACATCTGTCAACGCCGCTAATC30.11885895404120445No Hit
CTACGCGATTTCATAGTGGAGGCCTCCAGCAATCTTGAACACTCATCCTT30.11885895404120445No Hit
GCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGA30.11885895404120445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)