FastQCFastQC Report
Tue 7 May 2024
EGAF00004980333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2449
Total Bases66.1 kbp
Sequences flagged as poor quality0
Sequence length27
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAGTTCGATAATGGTGATATGTAT40.16333197223356472No Hit
GTACCCGACGACCAAAATTAGGGTCAA40.16333197223356472No Hit
TGGTAAAGGACTTCTTGAAGGTACGTT30.12249897917517355No Hit
TGTTCCATTCTTTAGCTCCTAGACCTT30.12249897917517355No Hit
TAACACCATCCTTCATGAACTTAATCC30.12249897917517355No Hit
TGGTGATATGTATGTTGACGGCCATAA30.12249897917517355No Hit
CGTCAACATACATATCACCATTATCGA30.12249897917517355No Hit
ATCAACATCATAGCCAGATGCCCAGAG30.12249897917517355No Hit
CAGCAAGAACCATACGACCAATATCAC30.12249897917517355No Hit
AAAATGTCTACAGTAGAGTCAATAGCA30.12249897917517355No Hit
CTGGTTATATTGACCATGCCGCTTTTC30.12249897917517355No Hit
GCTTTATCAATACCATGAAAAATATCA30.12249897917517355No Hit
GAACTGCGATGGGCATACTGTAACCAT30.12249897917517355No Hit
CAATTCATCCATTAACTTCTCAGTAAC30.12249897917517355No Hit
TACCGTCTTTCCAGAAATTGTTCCAAG30.12249897917517355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)