FastQCFastQC Report
Tue 7 May 2024
EGAF00004980334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2449
Total Bases240 kbp
Sequences flagged as poor quality0
Sequence length98
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.16333197223356472No Hit
TTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTC30.12249897917517355No Hit
TGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGG30.12249897917517355No Hit
AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCT30.12249897917517355No Hit
ATTAGCTGTACCATACTCAGGCACACAAAAATACTGATAGCAGTCGGCGT30.12249897917517355No Hit
TTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGT30.12249897917517355No Hit
AGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCT30.12249897917517355No Hit
TAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACA30.12249897917517355No Hit
TATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGG30.12249897917517355No Hit
TATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCT30.12249897917517355No Hit
TGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA30.12249897917517355No Hit
CTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTT30.12249897917517355No Hit
CGACCCTAAATTTTTTGCCTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTC30.12249897917517355No Hit
CATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGTTACTCC30.12249897917517355No Hit
CGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCG30.12249897917517355No Hit
TCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTG30.12249897917517355No Hit
TGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG30.12249897917517355No Hit
TTCCTAACCCTGATGAGGCCGTCCCTAGTTTTGTTTCTGGTGCTATGGCT30.12249897917517355No Hit
AACTAACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTT30.12249897917517355No Hit
TATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCAC30.12249897917517355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)