FastQCFastQC Report
Tue 7 May 2024
EGAF00004980335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2693
Total Bases72.7 kbp
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCAGAAAACTGGCCTAACGACGTTT50.18566654288897141No Hit
AAGCTGTTGCCGATACTTGGAACAATT30.11139992573338284No Hit
TATCAGCACCAACAGAAACAACCTGAT30.11139992573338284No Hit
TGCGTGTAGCGAACTGCGATGGGCATA30.11139992573338284No Hit
ACTATTTTAAAGCGCCGTGGATGCCTG30.11139992573338284No Hit
ATTCAGCGCCTTCCATGATGAGACAGG30.11139992573338284No Hit
CTGACGGTTATTTCCTAGACAAATTAG30.11139992573338284No Hit
ACGCGCAGGAAACACTGACGTTCTTAC30.11139992573338284No Hit
GCACTTTATGCGGACACTTCCTACAGG30.11139992573338284No Hit
GTATTTAGCCACATAGAAACCAACAGC30.11139992573338284No Hit
ATATCTGACTTTTTGTTAACGTATTTA30.11139992573338284No Hit
ACGTTCTTGGTCAGTATGCAAATTAGC30.11139992573338284No Hit
ATAATGGTGATATGTATGTTGACGGCC30.11139992573338284No Hit
GATGTAGCTTTAGGTGTCTGTAAAACA30.11139992573338284No Hit
GCCAGCAATATCGGTATAAGTCAAAGC30.11139992573338284No Hit
GCCGAGCGTATGCCGCATGACCTTTCC30.11139992573338284No Hit
AGAAGGGTAATAAGAACGAACCATAAA30.11139992573338284No Hit
TATGGTTACAGTATGCCCATCGCAGTT30.11139992573338284No Hit
GACCGCTCTCGTGCTCGTCGCTGCGTT30.11139992573338284No Hit
TGTTTATAGGTCTGTTGAACACGACCA30.11139992573338284No Hit
CCTTGAATGGCAGATTTAATACCAGCA30.11139992573338284No Hit
AAGTTGCCATACAAAACAGGGTCGCCA30.11139992573338284No Hit
GAAATGCCACAAGCCTCAATAGCAGGT30.11139992573338284No Hit
AGCATGAGCCTGTCGCATTGCATTCAT30.11139992573338284No Hit
TCCAGCCACTTAAGTGAGGTGATTTAT30.11139992573338284No Hit
TCAAGGCTCTAATGTTCCTAACCCTGA30.11139992573338284No Hit
AAACCAACATAAACATTATTGCCCGGC30.11139992573338284No Hit
GGTTTCGCTGAATCAGGTTATTAAAGA30.11139992573338284No Hit
ATCGCGTAGAGGCTTTGCTATTCAGCG30.11139992573338284No Hit
CCCTCATCGTCACGTTTATGGTGAACA30.11139992573338284No Hit
TAGTGAGTTGTTCCATTCTTTAGCTCC30.11139992573338284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)