FastQCFastQC Report
Tue 7 May 2024
EGAF00004980336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2693
Total Bases263.9 kbp
Sequences flagged as poor quality0
Sequence length98
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA40.14853323431117713No Hit
TTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTA40.14853323431117713No Hit
CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAA30.11139992573338284No Hit
AATCTCTTTAGTCGCAGTAGGCGGAAAACGAACAAGCGCAAGAGTAAACA30.11139992573338284No Hit
GCGTCGTAACCCAGCTTGGTAAGTTGGATTAAGCACTCCGTGGACAGATT30.11139992573338284No Hit
TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCT30.11139992573338284No Hit
CGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTAT30.11139992573338284No Hit
ACAGCTTTATCAATACCATGAAAAATATCAACCACACCAGAAGCAGCATC30.11139992573338284No Hit
CGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGG30.11139992573338284No Hit
GACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGA30.11139992573338284No Hit
CATCTCATTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCG30.11139992573338284No Hit
CAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCG30.11139992573338284No Hit
AGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT30.11139992573338284No Hit
CTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTGTCAAAAACTG30.11139992573338284No Hit
CGAAAGTGTTAACTTCTGCGTCATGGAAGCGATAAAACTCTGCAGGTTGG30.11139992573338284No Hit
GGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAA30.11139992573338284No Hit
TATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAA30.11139992573338284No Hit
CAGCGATAACCGGAGTAGTTGAAATGGTAATAAGACGACCAATCTGACCA30.11139992573338284No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.11139992573338284No Hit
AATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACAT30.11139992573338284No Hit
CGACCAATATCACGAAAATAGTCACGCAAAGCATTGGGATTATCATAAAA30.11139992573338284No Hit
CAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCT30.11139992573338284No Hit
CCCTGCAATTAAAATTGTTGACCACCTACATACCAAAGACGAGCGCCTTT30.11139992573338284No Hit
CACGCAAGGTAAACGCGAACAATTCAGCGGCTTTAACCGGACGCTCGACG30.11139992573338284No Hit
CGACAGCTTGGTTTTTAGTGAGTTGTTCCATTCTTTAGCTCCTAGACCTT30.11139992573338284No Hit
CGAAGCGCGCATAAATTTGAGCAGATTTGTCGTCACAGGTTGCGCCGCCA30.11139992573338284No Hit
CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGG30.11139992573338284No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN30.11139992573338284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)