FastQCFastQC Report
Tue 7 May 2024
EGAF00004980371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2577
Total Bases69.5 kbp
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATCCTTCATGAACTTAATCCACTGT30.11641443538998836No Hit
TTTGGTCTAACTTTACCGCTACTAAAT30.11641443538998836No Hit
ACTGGCGGCGATTGCGTACCCGACGAC30.11641443538998836No Hit
AACCAGTAGTGTTAACAGTCGGGAGAG30.11641443538998836No Hit
AAATGAAGAAATAACATCATGGTAACG30.11641443538998836No Hit
AAGGCCACGTATTTTGCAAGCTATTTA30.11641443538998836No Hit
AGATACAAACTCATCACGAACGTCAGA30.11641443538998836No Hit
TCAATAGCAGGTTTAAGAGCCTCGATA30.11641443538998836No Hit
TAAGGTACTGAATCTCTTTAGTCGCAG30.11641443538998836No Hit
ACAGGCAAAAAATTTAGGGTCGGCATC30.11641443538998836No Hit
CAGGAGCAGGAAAGCGAGGGTATCCTA30.11641443538998836No Hit
TATGCAGGGCGTTGAGTTCGATAATGG30.11641443538998836No Hit
CTAATTTTGGTCGTCGGGTACGCAATC30.11641443538998836No Hit
AGCCATAGCACCAGAAACAAAACTAGG30.11641443538998836No Hit
TTAACGTATTTAGCCACATAGAAACCA30.11641443538998836No Hit
TTCCATGACGCAGAAGTTAACACTTTC30.11641443538998836No Hit
CAAAAACTGACGCGTTGGATGAGGAGA30.11641443538998836No Hit
AACAGCTTTATCAATACCATGAAAAAT30.11641443538998836No Hit
CATTGTAGCATTGTGCCAATTCATCCA30.11641443538998836No Hit
TTCAAGGCTCTAATGTTCCTAACCCTG30.11641443538998836No Hit
ATATGGCTGTTGGTTTCTATGTGGCTA30.11641443538998836No Hit
ATCCGCGGCATTTAGTAGCGGTAAAGT30.11641443538998836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)