FastQCFastQC Report
Tue 7 May 2024
EGAF00004980375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2415
Total Bases65.2 kbp
Sequences flagged as poor quality0
Sequence length27
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAACGCCCTGCATACGAAAAGACAG30.12422360248447205No Hit
AATTTCACGCGGCGGCAAGTTGCCATA30.12422360248447205No Hit
GGCGTTATAACCTCACACTCAATCTTT30.12422360248447205No Hit
CATTTGGCGAGAAAGCTCAGTCTCAGG30.12422360248447205No Hit
ATGCCTACAGTATTGTTATCGGTAGCA30.12422360248447205No Hit
TTTTGACACTCTCACGTTGGCTGACGA30.12422360248447205No Hit
TTCTATGTGGCTAAATACGTTAACAAA30.12422360248447205No Hit
GCTGGACTTTGTAGGATACCCTCGCTT30.12422360248447205No Hit
ATCATGGTAACGCTGCATGAAGTAATC30.12422360248447205No Hit
TGGCGGAAAATGAGAAAATTCGACCTA30.12422360248447205No Hit
GACGATGAGGGACATAAAAAGTAAAAA30.12422360248447205No Hit
GTGCTGGTGCTGATGCTTCCTCTGCTG30.12422360248447205No Hit
GAGAACGAGAAGACGGTTACGCAGTTT30.12422360248447205No Hit
TGACTATTTTCGTGATATTGGTCGTAT30.12422360248447205No Hit
GTGATGAGTTTGTATCTGTTACTGAGA30.12422360248447205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)