FastQCFastQC Report
Tue 7 May 2024
EGAF00004980376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004980376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2415
Total Bases236.6 kbp
Sequences flagged as poor quality0
Sequence length98
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.16563146997929606No Hit
GTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTTATCGTT30.12422360248447205No Hit
GACCAGGGCGAGCGCCAGAACGTTTTTTACCTTTAGACATTACATCACTC30.12422360248447205No Hit
TTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCT30.12422360248447205No Hit
ACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAATTGT30.12422360248447205No Hit
TAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCCTGCAATTAAAAT30.12422360248447205No Hit
CAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTT30.12422360248447205No Hit
TCGTTAGTTGATGGCGAAAGGTCGCAAAGTAAGAGCTTCTCGAGCTGCGC30.12422360248447205No Hit
CGGGGCGGTGGTCTATAGTGTTATTAATATCAAGTTGGGGGAGCACATTG30.12422360248447205No Hit
TATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA30.12422360248447205No Hit
TTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTGG30.12422360248447205No Hit
GCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGC30.12422360248447205No Hit
CTCATCTCTCTTTTTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGC30.12422360248447205No Hit
TGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCG30.12422360248447205No Hit
TGAATAGCAAAGCCTCTACGCGATTTCATAGTGGAGGCCTCCAGCAATCT30.12422360248447205No Hit
TGGTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACA30.12422360248447205No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN30.12422360248447205No Hit
CAGTTTGAATATTAGACATAATTTATCCTCAAGTAAGGGGCCGAAGCCCC30.12422360248447205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)