FastQCFastQC Report
Thu 16 May 2024
EGAF00004982349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences262858856
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGCGGATATGGGTACGGCCCGGCG4402450.16748341931458455No Hit
AAGCCGCAGGCTCCACTCCTGGTGGT3699620.14074549575000814No Hit
TGCCCTCCAATGGATCCTCGTTAAAG3549910.13505004373906276No Hit
CGTTCGTTATCGGAATTAACCAGACA2689530.10231840923784587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)