FastQCFastQC Report
Thu 12 May 2022
EGAF00004982479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32309099
Sequences flagged as poor quality0
Sequence length125
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGGGGGCGAGCCCCGAG434820.13458128312398931No Hit
GTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTC354680.10977712501360685No Hit
GGACGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACCGGGGCCCGCGC342340.1059577675007279No Hit
GGCGGAGATGGGCGCCGCGAGGCGTCCAGTGCGGTAACGCGACCGATCCC331760.1026831481744508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)