FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004982515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19764332
Sequences flagged as poor quality0
Sequence length51
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTATG25650.032.28151743
CTCGTAT26150.032.0099142
CGTATGC26000.031.49545544
TCTCGTA27650.030.27346641
TATCTCG29050.029.28481139
ATCGGAA34750.028.2899482
GTATGCC29900.027.68831345
ATCTCGT30900.027.37995340
CGCCAAT34000.026.54670333
CAATATC35950.024.47334336
GATCGGA40300.024.2010841
ATATCTC38000.023.3353838
ACACGTC42050.023.21782913
CCAATAT38900.022.79346835
CGTCTGA43750.022.31480416
AGTCACG43150.022.26698528
ACGTCTG46750.021.02798715
GCCAATA44900.020.19870834
CACACGT48150.020.18338812
GTCACGC48850.019.90021129
Produced by FastQC (version 0.11.5)