EGAF00004982645 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00004982645
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16708433
Sequences flagged as poor quality	0
Sequence length	55
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	202106	1.209604754676875	No Hit
GTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCC	78566	0.4702176439885177	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	66581	0.39848739854898424	No Hit
TTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCG	42692	0.25551169280805686	No Hit
TTTCAATAGATCGCAGCGAGGGAGCTGCTCTGCTACGTACGAAACCCCGACCCAG	28170	0.16859749804185706	No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCTGATCTCGTATGCCG	25482	0.15250981345767134	TruSeq Adapter, Index 7 (97% over 39bp)
GCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTC	18385	0.11003425635426134	No Hit
CTACGAATGGTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAG	18074	0.1081729208238738	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	3330	39.726425	45
CGTATGC	3570	37.46747	47
TCGTATG	3595	37.07063	46
TATGCCG	3620	37.021187	49
CGTCTGA	4245	31.739828	17
GTATGCC	4295	31.20034	48
ACACGTC	4625	29.343884	14
CACGTCT	5115	26.628624	15
CAGTCAC	5130	26.264793	28
CACACGT	5240	26.086746	13
ACGTCTG	5395	25.746084	16
ACCAGAT	5480	24.587002	33
GATCTCG	5785	23.714394	42
AGTCACC	5685	23.700684	29
GCACACG	6125	22.757425	12
CCAGATC	6070	22.439312	34
CTGATCT	5955	22.420334	40
CTGAACT	6645	20.719305	20
TGATCTC	6755	20.381601	41
GTTTAGC	23290	19.57595	1