FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004982707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70787594
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCCCAC6977579198.57064925811719No Hit
AGTCCCAA3365790.47547738379128973No Hit
AGTACCAC1380570.1950299370254059No Hit
AGTCCAAC1068080.1508851960698085No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)