FastQCFastQC Report
Wed 11 May 2022
EGAF00004982720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50864835
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACATCA5023461598.76099077093241Illumina PCR Primer Index 1 (100% over 8bp)
TCACATAA2101840.41322064644464096No Hit
TAACATCA1074860.2113169147211428No Hit
TCAAATCA572440.11254140507877396No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)