FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004982732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4690056
Sequences flagged as poor quality0
Sequence length8
%GC64

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGGAG404741886.2978608357768No Hit
GTGGGGAG48086210.252798687265141No Hit
GGGTGGAG1274742.7179632823147526No Hit
GTGTGGAT73200.15607489548099213No Hit
GTGTGGAA68040.14507289465200415No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)