FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004982744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11113536
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATGAC1101562899.11902026501737No Hit
GAGATGAA286510.2578027371306486RNA PCR Primer, Index 45 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)