FastQCFastQC Report
Wed 11 May 2022
EGAF00004982750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63204048
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA6257462099.00413340613879No Hit
CACTCGAA2145690.33948616708853835RNA PCR Primer, Index 47 (100% over 8bp)
CAATCGGA965620.1527781891438346No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)