FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004982761

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982761
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7188424
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCA711246498.94330106293118No Hit
GGTCAGCA91380.12712104906444027No Hit
GATCAGAA88430.12301722881121091No Hit
GATCAACA76010.10573944998236054No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)