FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004982788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71312917
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA6952807597.49716871068392No Hit
GTCCTCTA5146780.7217177780008635No Hit
CTCCTCAA4705710.6598678329200865No Hit
CTACTCTA1841480.25822530860713494No Hit
CTCATCTA1527620.21421364659645042No Hit
CTCCTATA1450120.20334605019732963No Hit
CTCCACTA753650.10568211646706303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)