FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004982791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004982791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69770125
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTCTA6785145897.25001639311954No Hit
GTCCTCTA6201380.888830283735338No Hit
CTCCTCAA4639510.6649708596623555No Hit
CTACTCTA1972220.28267399549592326No Hit
CTCATCTA1626670.23314706688571935No Hit
CTCCTATA1562020.22388092324616016No Hit
CTCCACTA766110.10980487708743535No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)