Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004982850 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8523058 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 53 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCC | 384572 | 4.512136371710717 | No Hit |
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTC | 282303 | 3.3122266679400747 | No Hit |
CTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCC | 210900 | 2.474463977600528 | No Hit |
TCTGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTC | 150093 | 1.761022862920797 | No Hit |
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCTC | 29269 | 0.3434096072090557 | No Hit |
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACGTTTTTCAGGTCCT | 29005 | 0.34031212740779193 | No Hit |
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGTTTT | 19903 | 0.2335194715324007 | No Hit |
GATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCTC | 16542 | 0.19408526845646246 | No Hit |
TGATGGCTCAAACACAGCGACCTCGGGTGGGAACACCTTGTTCAGGTCCT | 16025 | 0.18801937051232082 | No Hit |
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAATG | 13987 | 0.16410776507680694 | No Hit |
AGTCTCTCAGCTGGTACACGGCAGGGTCAGGGTTCTGGATATTTGGAAAG | 11313 | 0.13273404921097567 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTGATG | 53300 | 0.0 | 122.405876 | 1 |
AGTCTCT | 24965 | 0.0 | 95.90945 | 1 |
GTCTCTC | 25420 | 0.0 | 94.04999 | 2 |
TCTCTCA | 27285 | 0.0 | 87.76896 | 3 |
TCAGCTG | 29925 | 0.0 | 80.04765 | 7 |
CTGATGG | 121595 | 0.0 | 73.49493 | 1 |
CAGCTGG | 32915 | 0.0 | 73.06005 | 8 |
GGCTCAA | 123190 | 0.0 | 72.67968 | 6 |
GCTCAAA | 123435 | 0.0 | 72.63829 | 7 |
CTCAAAC | 124005 | 0.0 | 72.31558 | 8 |
TCAAACA | 124820 | 0.0 | 71.94147 | 9 |
AGCTGGT | 33700 | 0.0 | 71.05911 | 9 |
ATGGCTC | 127315 | 0.0 | 70.16651 | 4 |
GATGGCT | 131925 | 0.0 | 67.77464 | 3 |
TGGCTCA | 132125 | 0.0 | 67.62301 | 5 |
TGATGGC | 140870 | 0.0 | 63.64247 | 2 |
CTCTCAG | 39180 | 0.0 | 61.39807 | 4 |
TCTCAGC | 40305 | 0.0 | 59.77364 | 5 |
CTCAGCT | 41280 | 0.0 | 58.48393 | 6 |
GTATCAA | 1940 | 0.0 | 41.937653 | 9 |