Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004996209 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15117658 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-151 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTGTCTA | 10340 | 0.0 | 31.081114 | 145 |
TGACGCG | 1990 | 0.0 | 24.469217 | 145 |
CGAATAT | 2690 | 0.0 | 21.722116 | 145 |
CGCCGTA | 5590 | 0.0 | 18.002459 | 145 |
CCTGTCG | 4400 | 0.0 | 17.706816 | 145 |
TCGCGGT | 2235 | 1.0839358E-8 | 17.429527 | 145 |
AAGGGGG | 10155 | 0.0 | 17.262184 | 145 |
GTCGCCG | 7600 | 0.0 | 17.085524 | 145 |
CGTATCA | 5920 | 0.0 | 16.998941 | 145 |
CGGGGGG | 13320 | 0.0 | 16.816158 | 145 |
GTCCTAG | 5135 | 0.0 | 16.784088 | 1 |
AGGGGGG | 10870 | 0.0 | 16.72401 | 145 |
CGACGAA | 15625 | 0.0 | 16.620798 | 145 |
GGGGGGG | 208945 | 0.0 | 16.515175 | 145 |
GTATTAG | 4785 | 0.0 | 15.138722 | 1 |
CCGACGA | 15415 | 0.0 | 14.951912 | 145 |
GTTCTAG | 6305 | 0.0 | 14.6758585 | 1 |
GTATAGG | 3510 | 0.0 | 14.612186 | 1 |
GTACTAA | 4175 | 0.0 | 14.564379 | 1 |
GCCGTAT | 5835 | 0.0 | 14.464866 | 145 |