FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28241491
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGATCAC618650.019.5431445
ACATAGA562150.019.4925442
CATAGAG563900.019.4647483
AGTTGGG461700.019.4580522
ATAGAGC564450.019.4510964
CCGCGAG313300.019.4495373
ATTGATC621150.019.439893
GATCACT623550.019.4104146
GGAGCAA364600.019.3998851
GAGCTAA568450.019.388557
AACCGCG407900.019.37381
TTGATCA623050.019.370984
CTGCGGA262950.019.3584381
CACATAG567900.019.3537061
GCGAGAA256150.019.337261
GAAGTAG292050.019.3175955
CGCGAGT315700.019.3048484
GCTAAGA571750.019.2943749
GAATGAA269450.019.2924481
AGAGCTA572000.019.2891986
Produced by FastQC (version 0.11.5)