FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24442847
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGCTGA143500.018.8843358
CGCTGAT144150.018.7920539
AAGTGAA149350.018.7536967
AGATGCC141500.018.5505668
AGCGAAG79450.018.5394443
GGGACCT122700.018.5347651
ACACCGG153350.018.5345251
AAAAGTG121650.018.4952435
GACTAAC143050.018.4848021
GGGAATG93500.018.4081631
GGGACGT75900.018.4052833
TGCCAAA141200.018.358681
AACCGCG144150.018.3229311
CTCGAAA105800.018.2815071
AGGGATG90600.018.268841
GCATGCG92600.018.241471
CGAACAT152900.018.235871
AAGGCAG103900.018.2211691
ATGCGAC69300.018.2099110
AGGCGAA48450.018.16228910
Produced by FastQC (version 0.11.5)