FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39217878
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGAGCGA277450.019.4025461
GTGGGAG362050.019.3155652
TCGTGAA368700.019.2846226
CCACGGA434100.019.2682971
TGAGAGG362500.019.2642961
GGCGATA319350.019.2067510
GAGCGAC210050.019.2055022
GAGAGGC313400.019.1964682
CACGGAG412600.019.191052
GGGAATG328550.019.1577431
TCCTGTA579200.019.1130168
CCCGACA333800.019.10324310
TCCGCAG367750.019.0869564
CCTGTAG347600.019.0868039
TTGCAGA385550.019.085075
AGGCGAT321400.019.0840249
TTGCGTC466150.019.0590821
AAGTGCG315400.019.0430322
CAGGCGA322500.019.0343868
CAGTGAC286050.019.0233738
Produced by FastQC (version 0.11.5)