FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24510555
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGCCA253050.019.3171221
CCAGCGA166750.019.1252121
GACTAAC139200.018.8441541
CCGGTAG123150.018.7827321
CAGCAAG108050.018.7142012
CGGACGT84350.018.6729531
CCGAACG104450.018.6299679
CAGCGAG76050.018.5936682
GGCTGGT199550.018.5925831
AGCCAAG187450.018.538953
CGGAGCT82150.018.479141
CGGGACG58450.018.4608552
CAGACGC157650.018.4512088
TCGGGAC123650.018.4479751
GAGCCAA121050.018.4392932
ACAGCCG117400.018.4078981
TGGGCGT97800.018.3954281
CTCAGAA169650.018.356181
AGGAGCG77900.018.3429768
CTGCGGA102050.018.305491
Produced by FastQC (version 0.11.5)