FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27443014
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAGCCA285300.019.1542931
CCAGCGA188250.019.0870191
GACTAAC161650.018.793421
CCGGTAG145950.018.7383421
ACTGAAC121050.018.6675871
CAGCGAG85700.018.6352752
CGGACGT88300.018.624211
AGCCAAG206100.018.5498813
CCGAACG121300.018.523139
GGCTGGT224650.018.4923551
CGGAGCT87250.018.4585321
ACAGCCG133750.018.4581471
GAGCCAA134350.018.4225272
TGGGCGT100100.018.4173871
CTGCGGA110650.018.3880751
CAGACGC174200.018.3454848
GGAGCGA62000.018.3375329
GCCAAGG143250.018.2973424
AGGGATG96200.018.2801841
GACGGCT130800.018.2779241
Produced by FastQC (version 0.11.5)