FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128379031
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGGCTT3508502027.32924506962512No Hit
GATTCTGG3159450924.61033453352674No Hit
ATGAAGAC2910684822.67258739474362No Hit
CCACTACA2882294922.451446139985276No Hit
NGCGGCTT5990990.46666421714929446No Hit
NATTCTGG5414780.42178071900231123No Hit
NTGAAGAC4963180.38660363466990183No Hit
NCACTACA4922390.38342632450621944No Hit
TGCGGCTA1454820.11332224497005278No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)