FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29417687
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACGGA157600.019.1394541
TCAGGAG145500.019.0715073
CAGTAAC243100.019.0337891
GCGCGAT143250.019.0313821
AGGGTGA144850.018.869511
TGACGGC156600.018.8208581
CACGCGG116100.018.8016629
AGTGAGG134450.018.7143881
AGGAGCC127300.018.6802432
TGAGCCG153500.018.6730251
GTGCCTG219550.018.6507028
ATAGAGG118200.018.6288014
GGGCATG176050.018.6243089
ATAAGAG120400.018.5882261
GGGGTGA79650.018.5805285
GCGACCA167950.018.5675751
GATAGAG104650.018.5660113
CGGGAGA67350.018.5145824
AGTGTCG112450.018.4967
GTGTGAC127750.018.4959878
Produced by FastQC (version 0.11.5)