FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004996533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004996533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28362912
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAGAG608700.019.72981610
AGGGAGA609800.019.7089869
CAGGGAG610650.019.696298
ACAGGGA611400.019.6246977
AGCCTAA664800.019.5554141
TACAGGG615150.019.5506136
AAGCGAG423200.019.5479289
GATCGCG343950.019.5445981
GTACAGG614600.019.524185
GGTGTAG701450.019.48745510
CTCAGAA443800.019.478621
GGCGGTA291450.019.4331554
CCTAAGT673100.019.4317993
GCCTAAG673900.019.4164242
ATCGCGG341000.019.407222
GTGGTGT704750.019.4018828
AGTACAG618900.019.4014554
ACGATGT426900.019.401211
GGCGTGT247950.019.3995671
GAAGACG233800.019.396216
Produced by FastQC (version 0.11.5)