FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004998623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004998623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49110956
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT503490.10252091203437376No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA203450.06.855979445
GATCGGA234650.06.20324945
CGGAAGA178850.06.16371745
AGATCGG280250.06.14920145
TCGGAAG192000.06.011068345
TAGATCG90300.05.804806744
Produced by FastQC (version 0.11.5)