FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004998634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004998634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44058246
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT21400.07.35908945
ACACGTC88000.06.11019445
TCTCGTA25800.05.92964944
CGGAAGA358150.05.81682245
GCACACG142950.05.72871245
GATCGGA499600.05.6019345
ATCGGAA443700.05.536980645
TCGGAAG394450.05.372775645
TATCTCG32050.05.19449642
AGATCGG578000.05.188503745
CACACGT117900.05.114000345
GAAGAGC347000.05.089556745
AGAGCAC260450.05.061893545