Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00004998635 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 40961954 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 3205 | 0.0 | 17.338358 | 45 |
TCTCGTA | 3380 | 0.0 | 15.974732 | 44 |
ATCTCGT | 5065 | 0.0 | 11.060097 | 43 |
CGTCTGA | 6010 | 0.0 | 9.432745 | 17 |
ACGTCTG | 6750 | 0.0 | 8.765179 | 16 |
ACACGTC | 6890 | 0.0 | 8.489125 | 14 |
CACGTCT | 7670 | 0.0 | 7.5964947 | 15 |
GTCACAC | 9375 | 0.0 | 6.6478295 | 30 |
CACACGT | 9355 | 0.0 | 6.348469 | 13 |
TCGGAAG | 23845 | 0.0 | 5.7742176 | 45 |
TCTGAAC | 11515 | 0.0 | 5.6656017 | 19 |
GATCGGA | 29650 | 0.0 | 5.62254 | 45 |
GATGATC | 10930 | 0.0 | 5.59866 | 39 |
ATCGGAA | 26425 | 0.0 | 5.58506 | 45 |
GCACACG | 11035 | 0.0 | 5.5450487 | 12 |
AGATCGG | 35165 | 0.0 | 5.4764886 | 45 |
CGGAAGA | 21865 | 0.0 | 5.463665 | 45 |
ACTTGAT | 11620 | 0.0 | 5.3825793 | 35 |
CCAGTCA | 11890 | 0.0 | 5.35521 | 27 |
ACACTTG | 11535 | 0.0 | 5.3247013 | 33 |