EGAF00004998655 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00004998655
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49192914
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	3095	0.0	17.732811	45
TCTCGTA	3265	0.0	16.671728	44
TATCTCG	3625	0.0	14.581705	42
ATCTCGT	4445	0.0	12.347143	43
CGTCTGA	7075	0.0	8.233453	17
ACGTCTG	8690	0.0	6.755063	16
ACACGTC	9275	0.0	6.232006	14
CACGTCT	10225	0.0	5.894951	15
GGTATCT	10505	0.0	5.6956034	40
GTATCTC	10895	0.0	5.656887	41
CGGAAGA	31430	0.0	5.617896	45
TCGGAAG	34675	0.0	5.5008245	45
ATCGGAA	38040	0.0	5.3630915	45
GTCACAC	12885	0.0	5.2370267	30
GTGGTAT	11825	0.0	5.2120695	38
AGTGGTA	12425	0.0	5.1414213	37
GATCGGA	42435	0.0	5.1362715	45