FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004998688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004998688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31839862
Sequences flagged as poor quality0
Sequence length50
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA99900.07.27475244
AGATCGG141250.07.17198144
GATCGGA114600.07.14871744
CGGAAGA80200.06.535402344
TCGGAAG87800.06.145274644
TAGATCG43550.05.916535444
TCTCGTA12201.8189894E-105.595921544
CAGATCG57400.05.40974744
Produced by FastQC (version 0.11.5)